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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 331ChIP-seq
  • 108total RNA-seq
  • 4ATAC-seq
  • 3DNase-seq
  • 1Hi-C
Assay category
  • 331DNA binding
  • 108Transcription
  • 7DNA accessibility
  • 13D chromatin structure
Target of assay
  • 229transcription factor
  • 82recombinant protein
  • 76control
  • 26RNA binding protein
  • 24histone
  • 24histone modification
  • 17broad histone mark
  • 9chromatin remodeller
  • 7narrow histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 173November, 2017
  • 136August, 2017
  • 50November, 2018
  • 35December, 2017
  • 15October, 2018
  • 14February, 2018
  • 12January, 2019
  • 8October, 2017
  • 4December, 2018
Available data
  • 447fastq
  • 445bam
  • 367bigWig
  • 235bed narrowPeak
  • 228bigBed narrowPeak
  • 108tsv
  • 16bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • 9bigBed broadPeak
Organism
  • 441Homo sapiens
Biosample type
  • 227cell line
  • 203tissue
  • primary cell
  • 17in vitro differentiated cells
Organ
  • 262liver
  • 114pancreas
  • 30connective tissue
  • 27adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 447AMP
Genome assembly (visualization)
  • 365hg19
  • 363GRCh38
Lab
  • 446AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
Audit category:
  • 19missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

447 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG220551
GM1287816
tissue
islet of Langerhans6891
liver501
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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