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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
331
ChIP-seq
108
total RNA-seq
4
ATAC-seq
3
DNase-seq
1
Hi-C
Assay category
331
DNA binding
108
Transcription
7
DNA accessibility
1
3D chromatin structure
Target of assay
229
transcription factor
82
recombinant protein
76
control
26
RNA binding protein
24
histone
24
histone modification
17
broad histone mark
9
chromatin remodeller
7
narrow histone mark
3
other context
3
other post-translational modification
Date released
173
November, 2017
136
August, 2017
50
November, 2018
35
December, 2017
15
October, 2018
14
February, 2018
12
January, 2019
8
October, 2017
4
December, 2018
Available data
447
fastq
445
bam
367
bigWig
235
bed narrowPeak
228
bigBed narrowPeak
108
tsv
16
bed broadPeak
14
bed bed3+
11
tagAlign
9
bigBed broadPeak
Organism
441
Homo sapiens
Biosample type
227
cell line
203
tissue
primary cell
17
in vitro differentiated cells
Organ
262
liver
114
pancreas
30
connective tissue
27
adipose tissue
16
blood
16
bodily fluid
6
spleen
5
brain
4
embryo
Project
447
AMP
Genome assembly (visualization)
365
hg19
363
GRCh38
Lab
446
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
19
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
447 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG2
205
5
1
GM12878
16
tissue
islet of Langerhans
6
89
1
liver
50
1
pancreas
13
white adipose tissue
12
subcutaneous adipose tissue
9
+ See 5 more…
in vitro differentiated cells
pancreatic endoderm
4
adipocyte
2
1
definitive endodermal cell
2
embryonic stem cell
2
posterior foregut
2
+ See 3 more…
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