Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 203ChIP-seq
  • 10DNase-seq
  • 3RRBS
Assay category
  • 203DNA binding
  • 10DNA accessibility
  • 3DNA methylation
Target of assay
  • 95transcription factor
  • 70histone
  • 70histone modification
  • 38control
  • 37broad histone mark
  • 33narrow histone mark
  • 17RNA binding protein
  • 16chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 105November, 2017
  • 31August, 2017
  • 26December, 2017
  • 22February, 2018
  • 16November, 2018
  • 9October, 2017
  • 6September, 2017
  • 1January, 2019
Available data
  • 216fastq
  • 211bam
  • 180bigWig
  • 169bed narrowPeak
  • 127bigBed narrowPeak
  • 73bed broadPeak
  • 64bigBed broadPeak
  • 37bed bed3+
  • 27tagAlign
  • 3bed bedMethyl
  • 3bigBed bedMethyl
Organism
  • 209Homo sapiens
Biosample type
  • 113cell line
  • 57tissue
  • primary cell
  • 44in vitro differentiated cells
  • 2stem cell
Organ
  • 122liver
  • 30pancreas
  • 18embryo
  • 11brain
  • 4connective tissue
  • 3adipose tissue
  • 3epithelium
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 216AMP
Genome assembly (visualization)
  • 190hg19
  • 161GRCh38
Lab
  • 216AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

216 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2112
GM128781
tissue
islet of Langerhans18
brain92
pancreas10
liver621
adipose tissue2
in vitro differentiated cells
pancreatic endoderm15
primitive gut cell7
definitive endodermal cell5
Posterior foregut4
Hepatic endoderm3
stem cell
hESC2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego