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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
10
DNase-seq
3
RRBS
Assay category
203
DNA binding
10
DNA accessibility
3
DNA methylation
Target of assay
95
transcription factor
70
histone
70
histone modification
38
control
37
broad histone mark
33
narrow histone mark
17
RNA binding protein
16
chromatin remodeller
2
other context
2
other post-translational modification
Date released
105
November, 2017
31
August, 2017
26
December, 2017
22
February, 2018
16
November, 2018
9
October, 2017
6
September, 2017
1
January, 2019
Available data
216
fastq
211
bam
180
bigWig
169
bed narrowPeak
127
bigBed narrowPeak
73
bed broadPeak
64
bigBed broadPeak
37
bed bed3+
27
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
Organism
209
Homo sapiens
Biosample type
113
cell line
57
tissue
primary cell
44
in vitro differentiated cells
2
stem cell
Organ
122
liver
30
pancreas
18
embryo
11
brain
4
connective tissue
3
adipose tissue
3
epithelium
2
musculature of body
1
blood
1
bodily fluid
1
spleen
Project
216
AMP
Genome assembly (visualization)
190
hg19
161
GRCh38
Lab
216
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
216 results
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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2
112
GM12878
1
tissue
islet of Langerhans
18
brain
9
2
pancreas
10
liver
6
2
1
adipose tissue
2
+ See 5 more…
in vitro differentiated cells
pancreatic endoderm
15
primitive gut cell
7
definitive endodermal cell
5
Posterior foregut
4
Hepatic endoderm
3
+ See 4 more…
stem cell
hESC
2
See all biosamples
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