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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
5
GRO-seq
5
total RNA-seq
2
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
128
DNA binding
5
Transcription
3
DNA accessibility
1
3D chromatin structure
Target of assay
75
transcription factor
38
control
15
histone
15
histone modification
12
broad histone mark
12
recombinant protein
3
chromatin remodeller
3
narrow histone mark
1
RNA binding protein
Date released
53
November, 2017
48
December, 2017
18
August, 2017
10
January, 2019
5
January, 2018
5
November, 2018
1
December, 2018
1
March, 2019
1
October, 2017
Available data
142
fastq
136
bam
102
bigWig
84
bed narrowPeak
68
bigBed narrowPeak
11
bed bed3+
5
bed broadPeak
5
tsv
4
bigBed broadPeak
Organism
142
Homo sapiens
Biosample type
64
cell line
primary cell
57
tissue
18
in vitro differentiated cells
3
stem cell
Organ
105
liver
8
pancreas
6
embryo
5
blood
5
bodily fluid
5
connective tissue
2
adipose tissue
1
brain
1
epithelium
Project
142
AMP
Genome assembly (visualization)
96
hg19
91
GRCh38
5
hg18
Lab
141
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
19
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
142 results
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ChIP-seq
GRO-seq
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
cell line
HepG2
53
5
1
GM12878
5
tissue
liver
46
pancreas
4
1
islet of Langerhans
2
1
white adipose tissue
2
cerebellum (Hemisphere)
1
in vitro differentiated cells
pancreatic endoderm
4
1
Posterior foregut
2
1
adipocyte
3
definitive endodermal cell
2
1
primitive gut cell
2
1
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stem cell
hESC
2
1
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