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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 162ChIP-seq
  • 102total RNA-seq
  • 28ATAC-seq
  • 9DNase-seq
  • 5WGBS
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 162DNA binding
  • 102Transcription
  • 37DNA accessibility
  • 5DNA methylation
  • 13D chromatin structure
Target of assay
  • 109transcription factor
  • 41control
  • 21RNA binding protein
  • 11chromatin remodeller
  • 9histone modification
  • 8histone
  • 5narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 105August, 2017
  • 44November, 2017
  • 39November, 2018
  • 35October, 2018
  • 33December, 2018
  • 24May, 2022
  • 13January, 2019
  • 7October, 2017
  • 4December, 2017
  • 2July, 2018
  • 1August, 2018
  • 1March, 2019
Available data
  • 308fastq
  • 305bam
  • 240bigWig
  • 156bed narrowPeak
  • 123bigBed narrowPeak
  • 96tsv
  • 11bed broadPeak
  • 9bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 1bedpe bed3+
Organism
  • 308Homo sapiens
Biosample type
  • primary cell
  • 202tissue
  • 104cell line
  • 2in vitro differentiated cells
Organ
  • 138pancreas
  • 80liver
  • 45blood
  • 45bodily fluid
  • 27connective tissue
  • 26adipose tissue
  • 17spleen
  • 1brain
Project
  • 308AMP
Genome assembly (visualization)
  • 253hg19
  • 238GRCh38
Lab
  • 282AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 7missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

308 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
islet of Langerhans9720
body of pancreas13422
spleen13112
liver132
subcutaneous adipose tissue121
cell line
HepG252511
GM1287845
in vitro differentiated cells
adipocyte1
white fat cell1
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