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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
102
total RNA-seq
28
ATAC-seq
9
DNase-seq
5
WGBS
1
Hi-C
1
pCHi-C
Assay category
162
DNA binding
102
Transcription
37
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
109
transcription factor
41
control
21
RNA binding protein
11
chromatin remodeller
9
histone modification
8
histone
5
narrow histone mark
3
broad histone mark
3
other context
3
other post-translational modification
Date released
105
August, 2017
44
November, 2017
39
November, 2018
35
October, 2018
33
December, 2018
24
May, 2022
13
January, 2019
7
October, 2017
4
December, 2017
2
July, 2018
1
August, 2018
1
March, 2019
Available data
308
fastq
305
bam
240
bigWig
156
bed narrowPeak
123
bigBed narrowPeak
96
tsv
11
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
6
txt
5
bed bedMethyl
5
bigBed bedMethyl
1
bedpe bed3+
Organism
308
Homo sapiens
Biosample type
primary cell
202
tissue
104
cell line
2
in vitro differentiated cells
Organ
138
pancreas
80
liver
45
blood
45
bodily fluid
27
connective tissue
26
adipose tissue
17
spleen
1
brain
Project
308
AMP
Genome assembly (visualization)
253
hg19
238
GRCh38
Lab
282
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
7
missing controlled_by
Audit category:
8
inconsistent control run_type
7
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
308 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
islet of Langerhans
97
20
body of pancreas
13
4
2
2
spleen
13
1
1
2
liver
13
2
subcutaneous adipose tissue
12
1
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cell line
HepG2
52
5
1
1
GM12878
45
in vitro differentiated cells
adipocyte
1
white fat cell
1
See all biosamples
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