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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
602
ChIP-seq
15
total RNA-seq
6
WGBS
6
single cell RNA-seq
5
GRO-seq
3
RRBS
2
DNase-seq
2
FAIRE-seq
1
ATAC-seq
Assay category
602
DNA binding
21
Transcription
9
DNA methylation
5
DNA accessibility
Target of assay
340
transcription factor
149
histone
149
histone modification
111
control
82
broad histone mark
82
recombinant protein
66
narrow histone mark
63
RNA binding protein
24
chromatin remodeller
2
other context
2
other post-translational modification
Date released
272
November, 2017
124
August, 2017
90
December, 2017
48
November, 2018
39
February, 2018
23
October, 2018
17
January, 2019
10
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
2
December, 2018
Available data
642
fastq
630
bam
532
bigWig
456
bed narrowPeak
361
bigBed narrowPeak
68
bed broadPeak
59
bigBed broadPeak
51
bed bed3+
27
tagAlign
21
tsv
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
Organism
635
Homo sapiens
Biosample type
324
cell line
primary cell
175
tissue
139
in vitro differentiated cells
4
stem cell
Organ
386
liver
75
pancreas
71
connective tissue
27
embryo
19
epithelium
18
adipose tissue
15
blood
15
bodily fluid
11
brain
7
spleen
2
musculature of body
Project
642
AMP
Genome assembly (visualization)
530
hg19
485
GRCh38
5
hg18
Lab
642
AMP-T2D consortium
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
44
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
642 results
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ChIP-seq
total RNA-seq
WGBS
single cell RNA-seq
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2
309
GM12878
15
tissue
liver
54
1
1
islet of Langerhans
28
6
1
1
body of pancreas
20
pancreas
16
2
1
white adipose tissue
12
+ See 7 more…
in vitro differentiated cells
adipocyte
53
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 6 more…
stem cell
hESC
3
1
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