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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 602ChIP-seq
  • 15total RNA-seq
  • 6WGBS
  • 6single cell RNA-seq
  • 5GRO-seq
  • 3RRBS
  • 2DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 602DNA binding
  • 21Transcription
  • 9DNA methylation
  • 5DNA accessibility
Target of assay
  • 340transcription factor
  • 149histone
  • 149histone modification
  • 111control
  • 82broad histone mark
  • 82recombinant protein
  • 66narrow histone mark
  • 63RNA binding protein
  • 24chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 272November, 2017
  • 124August, 2017
  • 90December, 2017
  • 48November, 2018
  • 39February, 2018
  • 23October, 2018
  • 17January, 2019
  • 10October, 2017
  • 6April, 2018
  • 6September, 2017
  • 5January, 2018
  • 2December, 2018
Available data
  • 642fastq
  • 630bam
  • 532bigWig
  • 456bed narrowPeak
  • 361bigBed narrowPeak
  • 68bed broadPeak
  • 59bigBed broadPeak
  • 51bed bed3+
  • 27tagAlign
  • 21tsv
  • 7bed bedMethyl
  • 7bigBed bedMethyl
  • 3tar
Organism
  • 635Homo sapiens
Biosample type
  • 324cell line
  • primary cell
  • 175tissue
  • 139in vitro differentiated cells
  • 4stem cell
Organ
  • 386liver
  • 75pancreas
  • 71connective tissue
  • 27embryo
  • 19epithelium
  • 18adipose tissue
  • 15blood
  • 15bodily fluid
  • 11brain
  • 7spleen
  • 2musculature of body
Project
  • 642AMP
Genome assembly (visualization)
  • 530hg19
  • 485GRCh38
  • 5hg18
Lab
  • 642AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 4inconsistent ontology term
Audit category:
  • 39missing controlled_by
Audit category:
  • 44inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

642 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
single cell RNA-seq
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2309
GM1287815
tissue
liver5411
islet of Langerhans28611
body of pancreas20
pancreas1621
white adipose tissue12
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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