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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
pCHi-C
3
DNase-seq
2
ChIP-seq
Assay category
31
DNA accessibility
19
Transcription
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
31
February, 2023
21
October, 2019
3
June, 2019
1
February, 2020
Available data
30
bed narrowPeak
5
tsv
3
bam
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
bigWig
Organism
56
Homo sapiens
Biosample type
56
tissue
primary cell
Organ
746
liver
645
connective tissue
596
pancreas
489
adipose tissue
380
heart
316
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
30
hg19
3
GRCh38
Lab
56
AMP-T2D consortium
biosample_type!
primary cell
lab.title!
Bing Ren, UCSD
organ_slims!
lymph node
BIOSAMPLE
ASSAY
56 results
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ATAC-seq
total RNA-seq
pCHi-C
DNase-seq
ChIP-seq
tissue
islet of Langerhans
1
14
4
2
retina
15
3
3
pigmented layer of retina
12
2
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