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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
total RNA-seq
44
ChIP-seq
21
ATAC-seq
1
pCHi-C
Assay category
124
Transcription
44
DNA binding
21
DNA accessibility
Target of assay
22
histone
22
histone modification
16
transcription factor
12
narrow histone mark
10
broad histone mark
6
control
5
RNA binding protein
Date released
601
February, 2021
397
November, 2017
352
August, 2017
272
October, 2019
223
August, 2021
194
May, 2020
190
May, 2021
136
June, 2019
120
July, 2018
94
December, 2017
94
May, 2019
87
November, 2018
81
February, 2023
October, 2018
61
November, 2019
57
July, 2019
56
March, 2020
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
26
May, 2022
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
129
bigWig
125
bam
118
tsv
6
bed narrowPeak
6
tagAlign
Organism
190
Homo sapiens
Biosample type
primary cell
131
in vitro differentiated cells
38
tissue
21
cell line
Organ
61
pancreas
26
epithelium
heart
2
embryo
1
connective tissue
1
thymus
Project
188
AMP
2
T1D
Genome assembly (visualization)
129
hg19
124
GRCh38
Lab
141
AMP-T2D consortium
49
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
biosample_type!
primary cell
lab.title!
Karen Mohlke, UNC
month_released!
October, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
190 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiomyocytes (cardiac muscle cell)
1
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tissue
islet of Langerhans
36
pancreas
1
thymus
1
cell line
EndoC_BH1
4
1
16
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