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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
46
ATAC-seq
29
ChIP-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
65
Transcription
51
DNA accessibility
29
DNA binding
2
DNA methylation
1
3D chromatin structure
Target of assay
18
histone
18
histone modification
14
broad histone mark
7
control
4
narrow histone mark
4
transcription factor
Date released
66
February, 2021
May, 2019
35
February, 2023
26
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
103
bam
87
bigWig
73
bed narrowPeak
66
tsv
23
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
149
Homo sapiens
Biosample type
83
tissue
66
cell line
primary cell
Organ
777
liver
645
connective tissue
597
pancreas
489
adipose tissue
359
heart
237
brain
176
kidney
158
bone element
149
blood vessel
149
vasculature
134
artery
118
epithelium
115
limb
75
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
AMP
Genome assembly (visualization)
130
GRCh38
95
hg19
Lab
149
AMP-T2D consortium
biosample_type!
primary cell
lab.title!
Katalin Susztak, Upenn
Maike Sander, UCSD
month_released!
May, 2019
BIOSAMPLE
ASSAY
149 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
1
36
2
tibial artery
1
1
23
2
aorta
1
4
2
1
1
ascending aorta
2
1
thoracic aorta
2
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
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