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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
39
ChIP-seq
25
total RNA-seq
12
ATAC-seq
10
snATAC-seq
5
STARR-seq
4
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
132
Transcription
39
DNA binding
22
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
667
February, 2021
397
November, 2017
352
August, 2017
280
October, 2019
194
May, 2020
193
May, 2021
187
August, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
February, 2020
23
October, 2017
19
April, 2020
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
May, 2023
1
October, 2022
Available data
123
tsv
45
bam
44
bigWig
39
bed narrowPeak
20
tagAlign
2
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
204
Homo sapiens
Biosample type
120
tissue
44
cell line
42
in vitro differentiated cells
primary cell
Organ
92
heart
31
liver
19
lung
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
2
kidney
1
adipose tissue
Project
187
AMP
19
LungMap
Genome assembly (visualization)
56
hg19
38
GRCh38
Lab
147
AMP-T2D consortium
Katalin Susztak, Upenn
36
Bing Ren, UCSD
19
Xin Sun, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
biosample_type!
primary cell
lab.title!
Katalin Susztak, Upenn
month_released!
February, 2020
BIOSAMPLE
ASSAY
206 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
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