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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
DNase-seq
53
single cell RNA-seq
38
ChIP-seq
5
total RNA-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
1
small RNA-seq
Assay category
70
DNA accessibility
59
Transcription
38
DNA binding
1
DNA methylation
Target of assay
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
68
June, 2019
47
September, 2023
23
April, 2019
20
October, 2019
8
February, 2021
4
July, 2019
3
December, 2019
2
August, 2021
2
March, 2020
Available data
113
bam
103
bigWig
97
bed narrowPeak
88
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
18
tsv
5
csv
5
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
177
Homo sapiens
Biosample type
158
tissue
primary cell
19
cell line
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
265
brain
199
blood vessel
199
vasculature
176
kidney
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
130
AMP
47
KPMP
Genome assembly (visualization)
103
hg19
102
GRCh38
Lab
Katalin Susztak, Upenn
128
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
7
audit script error
biosample_type!
primary cell
lab.title!
Katalin Susztak, Upenn
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
177 results
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DNase-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
RRBS
small RNA-seq
tissue
kidney
13
53
27
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 11 more…
cell line
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
HEK293T
2
glomerular visceral epithelial cell
1
1
+ See 1 more…
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