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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
ChIP-seq
Assay category
398
DNA binding
Target of assay
779
histone modification
778
histone
453
transcription factor
398
narrow histone mark
379
broad histone mark
302
control
94
RNA binding protein
89
recombinant protein
25
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
66
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
16
December, 2017
15
May, 2024
12
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
4
November, 2019
3
March, 2020
2
January, 2019
2
October, 2017
Available data
327
bigWig
324
bed narrowPeak
301
bam
127
tagAlign
122
bigBed narrowPeak
69
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
396
Homo sapiens
Biosample type
324
tissue
primary cell
55
in vitro differentiated cells
18
cell line
1
stem cell
Organ
114
brain
58
liver
42
pancreas
38
heart
29
connective tissue
18
blood vessel
18
vasculature
15
limb
14
epithelium
12
adipose tissue
10
kidney
9
musculature of body
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
blood
bodily fluid
1
lymph node
1
pituitary gland
Project
394
AMP
4
T1D
Genome assembly (visualization)
307
GRCh38
298
hg19
Lab
371
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
primary cell
lab.title!
Klaus Kaestner, Upenn
Mark McCarthy, Oxford
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
398 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
37
left cardiac atrium
15
subcutaneous abdominal adipose tissue
11
kidney
10
+ See 100 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 7 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
stem cell
hESC
1
See all biosamples
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