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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ATAC-seq
12
total RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
80
DNA accessibility
13
Transcription
Date released
667
February, 2021
397
November, 2017
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
163
June, 2019
144
May, 2021
120
July, 2018
115
May, 2019
94
December, 2017
94
February, 2023
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
63
March, 2020
61
November, 2019
47
September, 2023
42
May, 2022
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2018
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
65
bed narrowPeak
10
bed bed3
7
txt
4
bed bed3+
4
tsv
3
bed bedgraph
3
bigWig
Organism
93
Homo sapiens
Biosample type
primary cell
77
tissue
16
in vitro differentiated cells
1
cell line
Organ
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
15
epithelium
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
1
pancreas
Project
94
AMP
Genome assembly (visualization)
45
hg19
35
GRCh38
Lab
91
AMP-T2D consortium
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
biosample_type!
primary cell
lab.title!
Kyle Gaulton, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
August, 2017
BIOSAMPLE
ASSAY
94 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
ilium
1
1
+ See 5 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
1
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