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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
Assay category
94
DNA binding
Target of assay
685
histone modification
684
histone
488
transcription factor
361
narrow histone mark
322
broad histone mark
290
control
94
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
34
November, 2017
21
November, 2018
11
October, 2018
6
August, 2017
6
January, 2019
5
May, 2021
4
December, 2017
2
December, 2018
2
May, 2019
1
April, 2019
1
August, 2021
1
November, 2019
Available data
88
bam
86
bigWig
85
bed narrowPeak
84
fastq
78
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
tar
Organism
94
Homo sapiens
Biosample type
65
cell line
18
tissue
11
in vitro differentiated cells
primary cell
Organ
58
liver
10
blood
10
bodily fluid
heart
9
connective tissue
9
pancreas
5
adipose tissue
3
blood vessel
3
epithelium
3
vasculature
1
artery
1
kidney
Project
94
AMP
Genome assembly (visualization)
85
hg19
81
GRCh38
Lab
88
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
primary cell
lab.title!
Mark McCarthy, Oxford
organ_slims!
heart
BIOSAMPLE
ASSAY
94 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
tissue
body of pancreas
5
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
ascending aorta
1
+ See 5 more…
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
See all biosamples
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