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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
74
ChIP-seq
17
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
93
DNA accessibility
74
DNA binding
18
Transcription
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
110
bed narrowPeak
74
bam
58
fastq
48
bigWig
45
bigBed narrowPeak
10
bed bed3
7
txt
4
bed bed3+
4
tsv
3
bed bedgraph
Organism
190
Homo sapiens
Biosample type
169
tissue
primary cell
16
in vitro differentiated cells
6
cell line
Organ
70
pancreas
37
connective tissue
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
24
adipose tissue
15
epithelium
8
bone element
8
skeleton
1
brain
Project
168
AMP
23
T1D
Genome assembly (visualization)
90
hg19
80
GRCh38
Lab
165
AMP-T2D consortium
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
primary cell
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
191 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
body of pancreas
33
islet of Langerhans
11
5
2
retina
15
2
endocrine pancreas
16
+ See 11 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
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