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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
single cell RNA-seq
21
ChIP-seq
15
total RNA-seq
10
ATAC-seq
2
Capture-C
1
RNA microarray
Assay category
111
Transcription
21
DNA binding
10
DNA accessibility
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
control
7
narrow histone mark
Date released
601
February, 2021
397
November, 2017
352
August, 2017
254
October, 2019
194
May, 2020
June, 2019
145
August, 2021
144
May, 2021
120
July, 2018
110
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
July, 2019
74
October, 2018
63
March, 2020
61
November, 2019
56
February, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
8
January, 2018
6
April, 2018
6
September, 2017
5
December, 2019
2
May, 2022
1
August, 2018
1
August, 2022
1
May, 2023
1
October, 2022
Available data
111
tsv
45
bam
28
bigWig
23
bed narrowPeak
20
tagAlign
Organism
144
Homo sapiens
Biosample type
97
tissue
38
in vitro differentiated cells
10
cell line
primary cell
Organ
92
heart
8
embryo
6
blood vessel
6
vasculature
artery
2
epithelium
2
pancreas
1
adipose tissue
1
connective tissue
Project
145
AMP
Genome assembly (visualization)
38
GRCh38
37
hg19
Lab
145
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
biosample_type!
primary cell
month_released!
June, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
145 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
RNA microarray
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
+ See 8 more…
in vitro differentiated cells
neural progenitor cell
21
7
10
cell line
H1-hESC
8
EndoC_BH1
2
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