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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
35
ATAC-seq
27
total RNA-seq
10
snATAC-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
pCHi-C
1
whole genome sequencing assay
Assay category
55
DNA binding
45
DNA accessibility
27
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
23
histone
23
histone modification
23
transcription factor
12
narrow histone mark
11
broad histone mark
9
control
6
RNA binding protein
Date released
49
May, 2021
36
August, 2021
24
May, 2022
23
February, 2023
8
January, 2021
2
March, 2019
Available data
32
bed narrowPeak
24
bam
24
fastq
19
bigWig
10
tsv
6
txt
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
142
Homo sapiens
Biosample type
primary cell
56
tissue
47
in vitro differentiated cells
39
cell line
Organ
55
pancreas
31
liver
2
kidney
1
thymus
Project
110
AMP
32
T1D
Genome assembly (visualization)
40
hg19
1
GRCh38
Lab
3314
AMP-T2D consortium
142
Katalin Susztak, Upenn
104
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
biosample_type!
primary cell
month_released!
October, 2018
BIOSAMPLE
ASSAY
142 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
pCHi-C
whole genome sequencing assay
tissue
islet of Langerhans
30
12
6
2
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
HepG2
18
9
2
1
1
EndoC_BH1
3
2
HEK293T
2
Synthesized DNA
1
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