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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
5
ATAC-seq
5
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
pCHi-C
Assay category
37
DNA binding
15
DNA accessibility
14
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
48
May, 2021
19
April, 2020
5
February, 2023
Available data
5
bigWig
Organism
71
Homo sapiens
Biosample type
primary cell
47
in vitro differentiated cells
20
tissue
5
cell line
Organ
pancreas
19
lung
1
thymus
Project
47
AMP
19
LungMap
6
T1D
Genome assembly (visualization)
5
hg19
Lab
2857
AMP-T2D consortium
142
Katalin Susztak, Upenn
53
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
Anna Gloyn, Oxford
biosample_type!
primary cell
lab.title!
Anna Gloyn, Oxford
organ_slims!
pancreas
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
pCHi-C
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
lung
10
9
thymus
1
cell line
EndoC_BH1
3
2
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