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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
34
ATAC-seq
17
total RNA-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
pCHi-C
Assay category
44
DNA accessibility
37
DNA binding
17
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
49
May, 2021
24
May, 2022
23
February, 2023
8
January, 2021
Available data
24
bam
24
fastq
18
bed narrowPeak
6
txt
5
bigWig
Organism
104
Homo sapiens
Biosample type
primary cell
52
tissue
47
in vitro differentiated cells
5
cell line
Organ
51
pancreas
1
thymus
Project
72
AMP
32
T1D
Genome assembly (visualization)
23
hg19
Lab
3388
AMP-T2D consortium
142
Katalin Susztak, Upenn
104
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
biosample_type!
primary cell
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
pCHi-C
tissue
islet of Langerhans
29
11
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
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