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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
27
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
95
DNA binding
32
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
184
histone
184
histone modification
narrow histone mark
70
broad histone mark
25
control
Date released
54
November, 2017
25
June, 2019
18
May, 2019
14
October, 2017
12
February, 2020
12
October, 2019
11
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
124
bam
99
bigWig
89
bed narrowPeak
86
bigBed narrowPeak
64
tagAlign
31
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
23
tsv
11
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
151
Homo sapiens
Biosample type
151
tissue
primary cell
Organ
719
liver
616
connective tissue
552
pancreas
477
adipose tissue
342
heart
308
kidney
181
blood vessel
181
vasculature
158
bone element
151
brain
133
artery
107
limb
104
epithelium
73
musculature of body
60
blood
60
bodily fluid
54
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
151
AMP
Genome assembly (visualization)
99
GRCh38
54
hg19
Lab
151
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
biosample_type!
primary cell
month_released!
April, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
151 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
16
14
1
1
1
layer of hippocampus
15
caudate nucleus
10
1
1
temporal lobe
10
1
1
substantia nigra
10
1
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