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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
427
ChIP-seq
175
total RNA-seq
22
ATAC-seq
5
WGBS
4
DNase-seq
3
pCHi-C
3
small RNA-seq
2
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
427
DNA binding
179
Transcription
26
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
327
transcription factor
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
259
November, 2017
171
May, 2020
53
November, 2018
50
December, 2017
43
August, 2017
40
May, 2022
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
584
bigWig
569
bam
421
bed narrowPeak
388
fastq
356
bigBed narrowPeak
160
tsv
61
bed broadPeak
61
bigBed broadPeak
55
tagAlign
6
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hic
Organism
643
Homo sapiens
Biosample type
315
tissue
314
cell line
14
in vitro differentiated cells
primary cell
Organ
643
liver
608
connective tissue
555
pancreas
464
adipose tissue
270
heart
240
brain
179
kidney
175
blood vessel
175
vasculature
158
bone element
128
artery
107
epithelium
105
limb
78
musculature of body
56
eye
55
blood
55
bodily fluid
32
nerve
22
embryo
20
lung
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
643
AMP
Genome assembly (visualization)
583
hg19
519
GRCh38
Lab
603
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
month_released!
August, 2021
target.investigated_as!
control
BIOSAMPLE
ASSAY
643 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
tissue
liver
102
167
20
3
2
1
1
1
1
1
right lobe of liver
7
3
1
1
2
2
cell line
HepG2
304
5
1
1
2
1
in vitro differentiated cells
hepatocyte
14
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