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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
614
ChIP-seq
252
total RNA-seq
94
single cell RNA-seq
69
ATAC-seq
31
DNase-seq
13
WGBS
6
Hi-C
6
pCHi-C
4
small RNA-seq
2
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
614
DNA binding
350
Transcription
100
DNA accessibility
15
DNA methylation
6
3D chromatin structure
1
DNA sequencing
Target of assay
321
transcription factor
178
histone modification
177
histone
112
control
89
narrow histone mark
88
broad histone mark
82
recombinant protein
64
RNA binding protein
20
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
123
August, 2021
69
February, 2021
December, 2017
57
April, 2019
54
August, 2017
53
November, 2018
40
May, 2022
40
May, 2024
36
February, 2023
28
July, 2019
27
June, 2019
21
May, 2019
14
October, 2019
10
March, 2020
5
January, 2019
4
February, 2020
3
May, 2021
1
December, 2018
Available data
805
bam
775
bigWig
570
bed narrowPeak
402
fastq
394
bigBed narrowPeak
333
tsv
88
bed broadPeak
88
bigBed broadPeak
88
tagAlign
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
5
bedpe bed3+
5
hic
3
tar
1
bed bed3
1
csv
1
vcf
Organism
1094
Homo sapiens
Biosample type
626
tissue
467
cell line
primary cell
1
in vitro differentiated cells
Organ
714
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
99
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
25
spleen
24
embryo
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1094
AMP
Genome assembly (visualization)
740
hg19
726
GRCh38
Lab
983
AMP-T2D consortium
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
31
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
month_released!
December, 2017
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
1094 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
whole genome sequencing assay
tissue
liver
107
167
1
20
2
3
1
1
1
1
heart left ventricle
35
3
18
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
36
2
heart
14
4
1
18
1
1
1
+ See 12 more…
cell line
HepG2
378
14
1
1
2
2
2
1
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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