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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
133
ChIP-seq
7
ATAC-seq
6
WGBS
2
pCHi-C
2
small RNA-seq
1
DNase-seq
1
RNA microarray
Assay category
397
Transcription
133
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
68
transcription factor
33
histone
33
histone modification
30
control
20
broad histone mark
15
RNA binding protein
13
narrow histone mark
10
chromatin remodeller
Date released
386
February, 2021
57
August, 2017
27
December, 2018
23
October, 2018
18
January, 2019
16
November, 2018
10
July, 2019
February, 2020
2
January, 2018
1
August, 2018
1
August, 2021
1
February, 2023
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
499
bam
477
bigWig
397
tsv
104
fastq
66
bed narrowPeak
63
bigBed narrowPeak
8
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bedpe bed3+
1
bigBed broadPeak
Organism
546
Homo sapiens
Biosample type
485
tissue
61
cell line
primary cell
1
in vitro differentiated cells
Organ
776
liver
642
connective tissue
595
pancreas
486
adipose tissue
350
heart
250
kidney
228
brain
193
blood vessel
193
vasculature
158
bone element
135
artery
118
epithelium
87
limb
61
blood
61
bodily fluid
52
eye
48
musculature of body
42
nerve
37
embryo
25
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
547
AMP
Genome assembly (visualization)
478
hg19
475
GRCh38
Lab
547
AMP-T2D consortium
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
primary cell
month_released!
February, 2020
June, 2019
BIOSAMPLE
ASSAY
547 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
6
12
1
1
1
omental fat pad
4
11
1
1
1
white adipose tissue
12
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cell line
GM12878
60
1
in vitro differentiated cells
white fat cell
1
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