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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
548
ChIP-seq
185
total RNA-seq
21
ATAC-seq
5
WGBS
4
DNase-seq
3
Hi-C
3
small RNA-seq
2
STARR-seq
2
pCHi-C
1
RRBS
1
whole genome sequencing assay
Assay category
548
DNA binding
188
Transcription
25
DNA accessibility
6
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
31
August, 2021
8
July, 2019
6
October, 2019
5
January, 2019
February, 2021
3
March, 2020
2
February, 2020
1
December, 2018
Available data
668
bam
611
bigWig
465
fastq
434
bed narrowPeak
356
bigBed narrowPeak
170
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
6
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
vcf
Organism
775
Homo sapiens
Biosample type
399
cell line
361
tissue
15
in vitro differentiated cells
primary cell
Organ
774
liver
574
pancreas
314
heart
310
kidney
265
brain
193
connective tissue
133
blood vessel
133
vasculature
116
limb
103
adipose tissue
92
epithelium
82
musculature of body
73
artery
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
8
bone element
8
skeleton
5
gonad
5
ovary
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
775
AMP
Genome assembly (visualization)
610
hg19
519
GRCh38
Lab
704
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
month_released!
February, 2021
organ_slims!
intestine
BIOSAMPLE
ASSAY
775 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
small RNA-seq
STARR-seq
pCHi-C
RRBS
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
1
1
tissue
liver
145
167
20
3
2
1
1
1
1
right lobe of liver
10
3
1
1
2
2
C1 segment of cervical spinal cord
1
in vitro differentiated cells
hepatocyte
15
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