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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
372
ChIP-seq
Assay category
372
DNA binding
Target of assay
753
histone modification
752
histone
504
transcription factor
379
broad histone mark
372
narrow histone mark
285
control
104
RNA binding protein
89
recombinant protein
35
chromatin remodeller
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
66
August, 2017
35
November, 2017
33
May, 2019
May, 2020
23
April, 2019
16
December, 2017
15
May, 2024
12
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
4
November, 2019
3
January, 2019
3
March, 2020
2
October, 2017
Available data
301
bigWig
298
bed narrowPeak
275
bam
123
bigBed narrowPeak
100
tagAlign
70
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
370
Homo sapiens
Biosample type
297
tissue
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
114
brain
42
pancreas
38
heart
31
liver
29
connective tissue
18
blood vessel
18
vasculature
15
limb
14
epithelium
12
adipose tissue
10
kidney
9
musculature of body
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
368
AMP
4
T1D
Genome assembly (visualization)
289
GRCh38
272
hg19
Lab
345
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
primary cell
month_released!
January, 2018
May, 2020
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
372 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
37
left cardiac atrium
15
liver
15
subcutaneous abdominal adipose tissue
11
kidney
10
+ See 100 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 7 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
See all biosamples
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