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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
37
total RNA-seq
31
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
RNA microarray
Assay category
37
DNA binding
37
Transcription
31
DNA accessibility
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
4
transcription factor
3
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
26
February, 2021
26
May, 2021
19
December, 2017
16
November, 2019
15
February, 2023
6
November, 2020
5
March, 2020
2
August, 2021
October, 2019
1
December, 2019
Available data
73
bam
68
bigWig
44
bed narrowPeak
39
tsv
19
fastq
14
bigBed narrowPeak
3
tagAlign
1
bedpe bed3+
1
hic
Organism
115
Homo sapiens
Biosample type
primary cell
77
cell line
24
in vitro differentiated cells
15
tissue
Organ
771
liver
641
connective tissue
488
adipose tissue
462
pancreas
372
heart
299
kidney
179
brain
173
blood vessel
173
vasculature
158
bone element
116
epithelium
113
artery
82
musculature of body
61
blood
61
bodily fluid
53
limb
37
embryo
35
eye
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
4
T1D
Genome assembly (visualization)
82
hg19
67
GRCh38
Lab
110
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
81
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent control read length
biosample_type!
primary cell
month_released!
July, 2018
October, 2019
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
RNA microarray
cell line
EndoC_BH1
15
33
19
6
2
1
1
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
12
renal glomerulus
1
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