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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
ChIP-seq
Assay category
395
DNA binding
Target of assay
770
histone modification
769
histone
503
transcription factor
395
narrow histone mark
373
broad histone mark
306
control
103
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
66
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
16
December, 2017
15
May, 2024
12
May, 2021
11
October, 2018
9
August, 2021
8
February, 2018
November, 2019
3
January, 2019
3
March, 2020
2
October, 2017
Available data
324
bigWig
321
bed narrowPeak
298
bam
127
tagAlign
123
bigBed narrowPeak
70
fastq
21
bed broadPeak
11
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
393
Homo sapiens
Biosample type
324
tissue
primary cell
55
in vitro differentiated cells
15
cell line
1
stem cell
Organ
114
brain
58
liver
38
heart
38
pancreas
29
connective tissue
18
blood vessel
18
vasculature
15
limb
12
adipose tissue
10
epithelium
10
kidney
9
musculature of body
8
embryo
8
nerve
6
artery
4
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
391
AMP
4
T1D
Genome assembly (visualization)
304
GRCh38
295
hg19
Lab
368
AMP-T2D consortium
15
Patrick T. Ellinor, Broad
10
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
primary cell
month_released!
June, 2019
November, 2019
BIOSAMPLE
ASSAY
395 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
37
left cardiac atrium
15
subcutaneous abdominal adipose tissue
11
kidney
10
+ See 100 more…
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
+ See 7 more…
cell line
HepG2
9
Panc1
3
EndoC_BH1
2
GM12878
1
stem cell
hESC
1
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