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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
27
DNase-seq
17
total RNA-seq
5
ATAC-seq
4
small RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
209
DNA binding
33
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
87
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
12
February, 2020
11
July, 2019
March, 2020
2
November, 2018
1
February, 2023
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
21
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
264
Homo sapiens
Biosample type
264
tissue
primary cell
Organ
774
liver
643
connective tissue
586
pancreas
488
adipose tissue
373
heart
316
kidney
263
brain
196
blood vessel
196
vasculature
158
bone element
139
artery
122
limb
113
epithelium
77
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
24
spleen
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
264
AMP
Genome assembly (visualization)
203
GRCh38
143
hg19
Lab
264
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
primary cell
month_released!
March, 2020
BIOSAMPLE
ASSAY
264 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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