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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
463
total RNA-seq
139
ChIP-seq
23
ATAC-seq
6
WGBS
3
DNase-seq
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Assay category
465
Transcription
139
DNA binding
26
DNA accessibility
6
DNA methylation
Target of assay
70
histone
70
histone modification
40
broad histone mark
39
transcription factor
32
control
29
narrow histone mark
9
RNA binding protein
chromatin remodeller
Date released
452
February, 2021
123
August, 2017
23
October, 2018
14
February, 2023
10
July, 2019
5
August, 2021
4
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
1
June, 2019
1
May, 2021
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
555
bam
536
bigWig
463
tsv
96
fastq
56
bed narrowPeak
22
tagAlign
19
bed bed3+
13
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
4
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
641
Homo sapiens
Biosample type
546
tissue
95
in vitro differentiated cells
primary cell
1
stem cell
Organ
754
liver
642
connective tissue
594
pancreas
488
adipose tissue
380
heart
304
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
117
epithelium
82
musculature of body
56
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
642
AMP
Genome assembly (visualization)
552
hg19
531
GRCh38
Lab
638
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
4
inconsistent control read length
biosample_type!
primary cell
month_released!
May, 2023
September, 2017
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
642 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
Capture-C
small RNA-seq
RNA microarray
tissue
adipose tissue
381
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
+ See 4 more…
in vitro differentiated cells
adipocyte
5
65
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
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