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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
342
total RNA-seq
209
ChIP-seq
108
ATAC-seq
12
single cell RNA-seq
11
DNase-seq
11
snATAC-seq
6
Hi-C
4
MeRIP-seq
2
RRBS
2
WGBS
2
pCHi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
356
Transcription
209
DNA binding
131
DNA accessibility
6
3D chromatin structure
4
DNA methylation
Target of assay
134
histone
134
histone modification
81
broad histone mark
53
control
53
narrow histone mark
24
transcription factor
11
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
66
February, 2021
53
February, 2023
52
May, 2019
51
October, 2018
44
October, 2019
39
November, 2019
37
May, 2021
24
May, 2022
13
July, 2019
12
March, 2020
8
August, 2021
8
January, 2021
7
June, 2019
November, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
October, 2017
4
February, 2020
4
November, 2020
1
August, 2022
Available data
589
bam
500
bigWig
341
tsv
239
bed narrowPeak
206
fastq
128
bigBed narrowPeak
32
bed bed3+
24
bed broadPeak
22
tagAlign
10
bigBed broadPeak
6
txt
4
bedpe bed3+
4
hic
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe
1
hdf5
Organism
705
Homo sapiens
Biosample type
631
tissue
81
cell line
primary cell
Organ
724
liver
644
connective tissue
593
pancreas
488
adipose tissue
380
heart
318
kidney
263
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
epithelium
82
musculature of body
56
eye
46
blood
46
bodily fluid
43
nerve
37
embryo
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
682
AMP
30
T1D
Genome assembly (visualization)
557
GRCh38
552
hg19
Lab
649
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
biosample_type!
primary cell
month_released!
November, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
712 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
Hi-C
MeRIP-seq
RRBS
WGBS
pCHi-C
small RNA-seq
FAIRE-seq
tissue
islet of Langerhans
278
50
58
6
1
7
3
4
1
1
body of pancreas
3
35
4
2
2
coronary artery
1
5
36
2
pancreas
2
16
2
4
1
1
1
tibial artery
1
23
1
2
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cell line
smooth muscle cell of the coronary artery
52
6
8
Panc1
13
1
1
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