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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
141
ChIP-seq
23
ATAC-seq
6
WGBS
3
pCHi-C
2
Capture-C
2
DNase-seq
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
141
DNA binding
25
DNA accessibility
6
DNA methylation
Target of assay
70
histone
70
histone modification
40
broad histone mark
39
transcription factor
32
control
29
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
452
February, 2021
125
August, 2017
23
October, 2018
14
February, 2023
10
July, 2019
5
August, 2021
4
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
1
June, 2019
1
May, 2021
1
May, 2023
November, 2018
1
November, 2019
1
October, 2017
Available data
556
bam
537
bigWig
463
tsv
97
fastq
57
bed narrowPeak
22
tagAlign
18
bed bed3+
12
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
643
Homo sapiens
Biosample type
546
tissue
97
in vitro differentiated cells
primary cell
1
stem cell
Organ
724
liver
644
connective tissue
593
pancreas
488
adipose tissue
380
heart
318
kidney
263
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
56
eye
46
blood
bodily fluid
43
nerve
37
embryo
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
644
AMP
Genome assembly (visualization)
554
hg19
533
GRCh38
Lab
640
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
primary cell
month_released!
November, 2018
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
644 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
Capture-C
DNase-seq
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
1
+ See 4 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
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