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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
Assay category
83
DNA binding
Target of assay
83
histone
83
histone modification
45
broad histone mark
39
control
38
narrow histone mark
18
transcription factor
8
RNA binding protein
5
nucleotide modification
Date released
40
August, 2017
30
October, 2018
November, 2019
7
October, 2019
3
March, 2020
2
May, 2021
1
May, 2019
Available data
74
bigWig
71
bed narrowPeak
69
bam
49
bigBed narrowPeak
42
fastq
15
tagAlign
12
bed bed3+
12
bed broadPeak
Organism
77
Homo sapiens
Biosample type
73
tissue
primary cell
9
cell line
1
in vitro differentiated cells
Organ
184
brain
99
liver
95
heart
83
pancreas
70
connective tissue
54
blood vessel
54
vasculature
49
limb
32
adipose tissue
25
musculature of body
24
nerve
20
artery
20
kidney
17
epithelium
12
embryo
6
spleen
4
gonad
4
ovary
2
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
79
AMP
4
T1D
Genome assembly (visualization)
74
hg19
68
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
month_released!
November, 2019
BIOSAMPLE
ASSAY
83 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
30
body of pancreas
17
endocrine pancreas
14
pancreas
12
cell line
Panc1
7
EndoC_BH1
2
in vitro differentiated cells
pancreatic PP cell
1
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