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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
20
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
49
DNA accessibility
20
DNA binding
Target of assay
20
histone
20
histone modification
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
12
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
July, 2019
Available data
86
bam
69
bigWig
60
bed narrowPeak
56
tsv
11
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
125
Homo sapiens
Biosample type
66
cell line
59
tissue
primary cell
Organ
736
liver
605
connective tissue
539
pancreas
469
adipose tissue
323
heart
308
kidney
195
brain
163
blood vessel
163
vasculature
158
bone element
125
artery
99
epithelium
88
limb
66
musculature of body
61
blood
61
bodily fluid
56
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
125
AMP
Genome assembly (visualization)
112
GRCh38
77
hg19
Lab
125
AMP-T2D consortium
biosample_type!
primary cell
month_released!
November, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
125 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
2
tibial artery
1
1
9
2
pulmonary artery
2
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