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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
211
ChIP-seq
36
total RNA-seq
32
ATAC-seq
30
DNase-seq
6
pCHi-C
4
small RNA-seq
1
FAIRE-seq
1
RRBS
Assay category
211
DNA binding
63
DNA accessibility
40
Transcription
1
DNA methylation
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
25
control
Date released
107
October, 2019
82
November, 2017
32
February, 2023
28
June, 2019
28
May, 2019
16
October, 2017
13
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
Available data
229
bam
222
bed narrowPeak
205
bigWig
119
bigBed narrowPeak
118
tagAlign
39
bed broadPeak
30
bed bed3+
30
bigBed broadPeak
28
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
321
Homo sapiens
Biosample type
321
tissue
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
321
AMP
Genome assembly (visualization)
206
GRCh38
173
hg19
Lab
321
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
primary cell
month_released!
October, 2022
month_released!!
October, 2022
BIOSAMPLE
ASSAY
321 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
FAIRE-seq
RRBS
tissue
brain
20
1
1
14
1
layer of hippocampus
23
islet of Langerhans
2
14
2
4
retina
3
15
3
caudate nucleus
15
1
1
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