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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
total RNA-seq
68
ChIP-seq
21
ATAC-seq
6
single cell RNA-seq
1
pCHi-C
Assay category
148
Transcription
68
DNA binding
21
DNA accessibility
Target of assay
38
histone
38
histone modification
20
narrow histone mark
18
broad histone mark
16
transcription factor
14
control
5
RNA binding protein
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
173
bam
169
bigWig
142
tsv
45
fastq
22
bed narrowPeak
6
tagAlign
Organism
238
Homo sapiens
Biosample type
primary cell
171
in vitro differentiated cells
46
tissue
21
cell line
Organ
67
pancreas
26
epithelium
15
embryo
3
heart
1
connective tissue
1
thymus
Project
236
AMP
2
T1D
Genome assembly (visualization)
169
hg19
164
GRCh38
Lab
189
AMP-T2D consortium
49
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
Audit category:
2
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
238 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
5
pancreatic endoderm
4
9
induced pluripotent stem cell
9
definitive endodermal cell
2
3
+ See 16 more…
tissue
islet of Langerhans
36
6
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
4
1
16
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