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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
single cell RNA-seq
74
ATAC-seq
74
total RNA-seq
39
ChIP-seq
16
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
189
Transcription
90
DNA accessibility
39
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
17
histone
17
histone modification
11
control
11
transcription factor
9
narrow histone mark
8
broad histone mark
1
RNA binding protein
Date released
397
November, 2017
310
August, 2021
276
October, 2019
227
August, 2017
215
February, 2021
194
May, 2020
192
May, 2021
162
June, 2019
120
July, 2018
115
May, 2019
103
February, 2023
94
December, 2017
86
November, 2018
80
April, 2019
67
July, 2019
66
May, 2022
61
March, 2020
60
November, 2019
51
October, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
10
November, 2020
8
January, 2021
7
January, 2018
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2022
1
October, 2022
0
June, 2018
Available data
123
tsv
101
bed narrowPeak
64
xls
57
txt
45
bam
42
bigWig
20
tagAlign
2
bedpe bed3+
2
hic
1
vcf
Organism
328
Homo sapiens
Biosample type
247
tissue
44
cell line
38
in vitro differentiated cells
primary cell
Organ
130
kidney
92
heart
31
liver
19
lung
8
embryo
6
blood vessel
6
vasculature
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
310
AMP
19
LungMap
Genome assembly (visualization)
102
GRCh38
53
hg19
Lab
146
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
19
Xin Sun, UCSD
Audit category:
3
inconsistent ontology term
biosample_type!
primary cell
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
329 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 11 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
21
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