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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
single cell RNA-seq
84
ATAC-seq
66
total RNA-seq
54
ChIP-seq
16
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
181
Transcription
100
DNA accessibility
54
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
29
histone
29
histone modification
18
broad histone mark
14
control
11
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
667
February, 2021
397
November, 2017
352
August, 2017
307
August, 2021
280
October, 2019
194
May, 2020
191
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
87
November, 2018
81
December, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
26
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2021
7
January, 2018
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
115
bed narrowPeak
115
tsv
64
xls
57
txt
52
bam
50
bigWig
34
tagAlign
17
fastq
6
bigBed narrowPeak
4
bed broadPeak
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
347
Homo sapiens
Biosample type
271
tissue
42
in vitro differentiated cells
36
cell line
primary cell
Organ
130
kidney
92
heart
31
liver
19
lung
16
brain
9
pancreas
embryo
6
blood vessel
6
connective tissue
6
vasculature
2
adipose tissue
2
artery
2
epithelium
1
spleen
Project
330
AMP
19
LungMap
Genome assembly (visualization)
108
GRCh38
62
hg19
Lab
161
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
19
Xin Sun, UCSD
4
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
primary cell
organ_slims!
embryo
BIOSAMPLE
ASSAY
349 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 17 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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