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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
570
total RNA-seq
84
RNA microarray
59
ATAC-seq
16
single cell RNA-seq
11
snATAC-seq
8
ChIP-seq
3
snDrop-seq
1
pCHi-C
Assay category
586
Transcription
70
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
593
bam
569
bigWig
552
tsv
96
txt
60
bed narrowPeak
24
fastq
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3+
1
bed bed3
Organism
751
Homo sapiens
Biosample type
630
tissue
primary cell
96
cell line
26
in vitro differentiated cells
Organ
452
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
50
pancreas
43
liver
26
epithelium
19
lung
8
kidney
8
skeleton
6
limb
2
musculature of body
Project
733
AMP
19
LungMap
Genome assembly (visualization)
610
hg19
566
GRCh38
Lab
669
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
Audit category:
128
inconsistent ontology term
6
audit script error
1
inconsistent replicate
biosample_type!
primary cell
BIOSAMPLE
ASSAY
752 results
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total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
liver
20
20
1
islet of Langerhans
6
18
+ See 16 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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