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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
ChIP-seq
164
DNase-seq
89
total RNA-seq
9
WGBS
5
RRBS
2
ATAC-seq
1
FAIRE-seq
Assay category
243
DNA binding
167
DNA accessibility
89
Transcription
14
DNA methylation
Target of assay
161
histone modification
160
histone
93
broad histone mark
66
narrow histone mark
45
transcription factor
37
control
6
RNA binding protein
2
chromatin remodeller
Date released
601
February, 2021
397
November, 2017
352
August, 2017
313
August, 2021
254
October, 2019
194
May, 2020
May, 2021
161
June, 2019
120
July, 2018
110
May, 2019
94
December, 2017
87
November, 2018
82
February, 2023
80
April, 2019
76
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
387
bigWig
385
bam
270
bed narrowPeak
229
fastq
194
bed bed3+
188
bed broadPeak
184
bigBed narrowPeak
162
bigBed broadPeak
89
tsv
73
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
Organism
506
Homo sapiens
Biosample type
445
tissue
primary cell
68
in vitro differentiated cells
Organ
151
pancreas
126
connective tissue
68
kidney
58
adipose tissue
58
musculature of body
54
liver
32
limb
27
heart
25
brain
18
ureter
3
blood vessel
3
eye
3
vasculature
artery
Project
513
AMP
Genome assembly (visualization)
374
hg19
368
GRCh38
Lab
513
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
27
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
month_released!
May, 2021
organ_slims!
artery
BIOSAMPLE
ASSAY
513 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
1
89
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
heart
18
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in vitro differentiated cells
adipocyte
67
1
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