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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
89
total RNA-seq
10
ATAC-seq
9
WGBS
5
RRBS
3
DNase-seq
1
FAIRE-seq
Assay category
258
DNA binding
89
Transcription
14
DNA accessibility
14
DNA methylation
Target of assay
173
histone modification
172
histone
103
broad histone mark
68
narrow histone mark
45
transcription factor
40
control
6
RNA binding protein
2
chromatin remodeller
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
August, 2018
1
August, 2022
1
October, 2022
Available data
246
fastq
240
bigWig
239
bam
121
bed narrowPeak
89
tsv
87
tagAlign
33
bed bed3+
31
bed broadPeak
29
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bigBed broadPeak
Organism
368
Homo sapiens
Biosample type
307
tissue
68
in vitro differentiated cells
primary cell
Organ
152
pancreas
126
connective tissue
58
adipose tissue
54
liver
26
musculature of body
16
brain
1
spleen
Project
375
AMP
Genome assembly (visualization)
242
hg19
221
GRCh38
Lab
374
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
31
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
month_released!
August, 2018
February, 2020
BIOSAMPLE
ASSAY
375 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
brain
15
+ See 9 more…
in vitro differentiated cells
adipocyte
67
1
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