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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 243ChIP-seq
  • 89total RNA-seq
  • 9WGBS
  • 5RRBS
  • 3DNase-seq
  • 2ATAC-seq
  • 1FAIRE-seq
Assay category
  • 243DNA binding
  • 89Transcription
  • 14DNA methylation
  • 6DNA accessibility
Target of assay
  • 161histone modification
  • 160histone
  • 93broad histone mark
  • 66narrow histone mark
  • 45transcription factor
  • 37control
  • 6RNA binding protein
  • 2chromatin remodeller
Date released
  • 667February, 2021
  • 397November, 2017
  • 352August, 2017
  • 315August, 2021
  • 280October, 2019
  • 194May, 2020
  • 193May, 2021
  • 163June, 2019
  • 120July, 2018
  • 117February, 2023
  • 115May, 2019
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 77July, 2019
  • 74October, 2018
  • 66May, 2022
  • 63March, 2020
  • 61November, 2019
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 15May, 2023
  • 10November, 2020
  • 8January, 2018
  • 8January, 2021
  • 6April, 2018
  • 6September, 2017
  • 5December, 2019
  • 5March, 2019
  • 4March, 2023
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 229fastq
  • 226bigWig
  • 224bam
  • 109bed narrowPeak
  • 89tsv
  • 73tagAlign
  • 33bed bed3+
  • 27bed broadPeak
  • 23bigBed narrowPeak
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 1bigBed broadPeak
Organism
  • 345Homo sapiens
Biosample type
  • 284tissue
  • 68in vitro differentiated cells
  • primary cell
Organ
  • 147pancreas
  • 125connective tissue
  • 57adipose tissue
  • 54liver
  • 26musculature of body
Project
  • 352AMP
Genome assembly (visualization)
  • 229hg19
  • 207GRCh38
Lab
  • 352AMP-T2D consortium
Audit category:
  • 27missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

352 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans428911
liver4831
subcutaneous abdominal adipose tissue363
skeletal muscle tissue224
pancreas14
in vitro differentiated cells
adipocyte671
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