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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
467
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
467
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
305
transcription factor
85
histone
85
histone modification
82
recombinant protein
74
control
55
RNA binding protein
50
broad histone mark
35
narrow histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
470
bam
405
bigWig
403
fastq
380
bed narrowPeak
379
bigBed narrowPeak
78
tagAlign
73
bed broadPeak
67
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
bedpe bed3+
Organism
485
Homo sapiens
Biosample type
376
cell line
108
tissue
primary cell
1
in vitro differentiated cells
Organ
368
liver
84
brain
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
adipose tissue
2
connective tissue
Project
485
AMP
Genome assembly (visualization)
353
GRCh38
343
hg19
Lab
485
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
BIOSAMPLE
ASSAY
485 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
pCHi-C
cell line
HepG2
360
1
GM12878
15
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
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in vitro differentiated cells
white fat cell
1
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