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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
154
DNA binding
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
106
histone
106
histone modification
64
broad histone mark
42
narrow histone mark
33
control
15
transcription factor
5
RNA binding protein
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
0
September, 2020
Available data
196
bed narrowPeak
160
bam
137
bigWig
123
tsv
93
bigBed narrowPeak
64
xls
57
txt
20
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
429
Homo sapiens
Biosample type
344
tissue
primary cell
44
cell line
42
in vitro differentiated cells
Organ
130
kidney
113
heart
56
blood vessel
56
vasculature
31
liver
28
brain
8
embryo
7
artery
7
limb
7
musculature of body
6
pancreas
5
connective tissue
2
epithelium
1
adipose tissue
Project
430
AMP
Genome assembly (visualization)
194
GRCh38
150
hg19
Lab
262
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
430 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
right cardiac atrium
6
18
heart left ventricle
18
left cardiac atrium
18
aorta
13
4
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cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
See all biosamples
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