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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
436
ChIP-seq
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
436
DNA binding
180
Transcription
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
252
transcription factor
102
histone
102
histone modification
79
control
66
recombinant protein
58
broad histone mark
44
narrow histone mark
35
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
428
bam
410
bed narrowPeak
369
bigWig
315
fastq
306
bigBed narrowPeak
123
tsv
98
tagAlign
64
bed broadPeak
64
xls
58
bigBed broadPeak
57
txt
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
711
Homo sapiens
Biosample type
359
cell line
311
tissue
42
in vitro differentiated cells
primary cell
Organ
346
liver
130
kidney
92
heart
82
brain
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
2
artery
2
epithelium
1
adipose tissue
Project
712
AMP
Genome assembly (visualization)
376
GRCh38
329
hg19
Lab
544
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
biosample_type!
primary cell
month_released!
April, 2018
BIOSAMPLE
ASSAY
712 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
cell line
HepG2
333
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
tissue
kidney
8
64
49
6
1
layer of hippocampus
22
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 17 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
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