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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106single cell RNA-seq
  • 76ATAC-seq
  • 74total RNA-seq
  • 39ChIP-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 4Capture-C
  • 3Hi-C
  • 1RNA microarray
  • 1whole genome sequencing assay
Assay category
  • 180Transcription
  • 82DNA accessibility
  • 39DNA binding
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 17histone
  • 17histone modification
  • 11control
  • 11transcription factor
  • 9narrow histone mark
  • 8broad histone mark
  • 1RNA binding protein
Date released
  • 667February, 2021
  • 397November, 2017
  • 352August, 2017
  • 315August, 2021
  • 280October, 2019
  • 194May, 2020
  • 193May, 2021
  • 163June, 2019
  • 120July, 2018
  • 117February, 2023
  • 115May, 2019
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 77July, 2019
  • 74October, 2018
  • 66May, 2022
  • 63March, 2020
  • 61November, 2019
  • 47September, 2023
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 15May, 2023
  • 10November, 2020
  • 8January, 2018
  • 8January, 2021
  • 6April, 2018
  • 6September, 2017
  • 5December, 2019
  • 5March, 2019
  • 4March, 2023
  • 1August, 2018
  • 1August, 2022
  • 1July, 2025
  • 1October, 2022
Available data
  • 123tsv
  • 103bed narrowPeak
  • 64xls
  • 57txt
  • 45bam
  • 44bigWig
  • 20tagAlign
  • 2bed bed3+
  • 2bedpe bed3+
  • 2hic
  • 1vcf
Organism
  • 314Homo sapiens
Biosample type
  • 229tissue
  • 44cell line
  • 42in vitro differentiated cells
  • primary cell
Organ
  • 130kidney
  • 92heart
  • 31liver
  • 8embryo
  • 6blood vessel
  • 6vasculature
  • 5connective tissue
  • 4pancreas
  • 2artery
  • 2epithelium
  • 1adipose tissue
Project
  • 315AMP
Genome assembly (visualization)
  • 102GRCh38
  • 57hg19
Lab
  • 147AMP-T2D consortium
  • 128Katalin Susztak, Upenn
  • 36Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

315 results

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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney8644961
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
aorta4
aortic valve4
pulmonary valve4
tricuspid valve4
mitral valve3
cardiac atrium2
cardiac ventricle2
interventricular septum2
islet of Langerhans11
pulmonary artery2
subcutaneous adipose tissue1
cell line
HepG2918211
H1-hESC8
EndoC_BH12
HEK293T2
Synthesized DNA1
in vitro differentiated cells
neural progenitor cell10721
adipocyte11
osteoblast11
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