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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
38
ATAC-seq
26
total RNA-seq
10
MeRIP-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
94
DNA binding
39
DNA accessibility
27
Transcription
Target of assay
42
transcription factor
31
histone
31
histone modification
26
control
16
narrow histone mark
15
broad histone mark
5
nucleotide modification
4
RNA binding protein
3
chromatin remodeller
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
118
bam
118
fastq
110
bed narrowPeak
92
bigWig
50
bigBed narrowPeak
16
bed bed3+
7
txt
Organism
170
Homo sapiens
Biosample type
primary cell
118
tissue
43
in vitro differentiated cells
6
cell line
3
stem cell
Organ
103
liver
34
pancreas
25
epithelium
13
embryo
2
musculature of body
Project
170
AMP
Genome assembly (visualization)
116
hg19
77
GRCh38
Lab
96
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent control
10
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
primary cell
month_released!
May, 2023
BIOSAMPLE
ASSAY
170 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
single cell RNA-seq
snATAC-seq
tissue
liver
38
20
20
islet of Langerhans
18
6
4
right lobe of liver
10
skeletal muscle tissue
1
1
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
cell line
EndoC_BH1
6
stem cell
hESC
3
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