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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
509
total RNA-seq
84
RNA microarray
69
ATAC-seq
6
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
ChIP-seq
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
515
Transcription
71
DNA accessibility
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
601
February, 2021
397
November, 2017
352
August, 2017
272
October, 2019
223
August, 2021
194
May, 2020
190
May, 2021
136
June, 2019
120
July, 2018
94
December, 2017
94
May, 2019
87
November, 2018
81
February, 2023
74
October, 2018
66
May, 2022
61
November, 2019
57
July, 2019
56
March, 2020
47
September, 2023
39
February, 2018
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
504
tsv
503
bam
496
bigWig
96
txt
40
bed narrowPeak
11
bed bed3
7
bed bedgraph
6
csv
5
bed bed3+
2
tagAlign
Organism
681
Homo sapiens
Biosample type
604
tissue
primary cell
42
in vitro differentiated cells
36
cell line
Organ
466
connective tissue
387
adipose tissue
158
bone element
heart
101
artery
101
blood vessel
101
vasculature
45
pancreas
41
epithelium
31
eye
16
skeleton
8
kidney
6
limb
3
liver
1
brain
Project
659
AMP
23
T1D
Genome assembly (visualization)
552
hg19
502
GRCh38
Lab
656
AMP-T2D consortium
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
133
inconsistent ontology term
5
audit script error
1
inconsistent replicate
biosample_type!
primary cell
month_released!
December, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
682 results
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Clear Filters
total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
snDrop-seq
ChIP-seq
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
5
11
2
retina
2
15
+ See 21 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
5
5
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
+ See 3 more…
cell line
EndoC_BH1
26
3
2
1
HepG2
1
1
iPSC derived cell line
2
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