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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
544
total RNA-seq
84
RNA microarray
33
ChIP-seq
21
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
1
pCHi-C
Assay category
550
Transcription
33
DNA binding
21
DNA accessibility
Target of assay
35
histone
35
histone modification
20
broad histone mark
narrow histone mark
10
transcription factor
5
RNA binding protein
3
control
Date released
667
February, 2021
362
November, 2017
306
August, 2021
286
August, 2017
181
May, 2021
167
May, 2020
163
June, 2019
148
October, 2019
July, 2018
117
February, 2023
87
November, 2018
82
May, 2019
78
December, 2017
77
July, 2019
66
May, 2022
63
October, 2018
60
March, 2020
57
April, 2019
57
November, 2019
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
574
bigWig
569
bam
552
tsv
89
txt
47
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
692
Homo sapiens
Biosample type
570
tissue
96
cell line
primary cell
26
in vitro differentiated cells
Organ
452
connective tissue
386
adipose tissue
150
bone element
91
heart
66
artery
66
blood vessel
66
vasculature
26
epithelium
26
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
692
AMP
Genome assembly (visualization)
591
GRCh38
571
hg19
Lab
667
AMP-T2D consortium
25
Patrick T. Ellinor, Broad
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
biosample_type!
primary cell
month_released!
July, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
692 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
left cardiac atrium
25
kidney
5
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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