Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
492
total RNA-seq
84
RNA microarray
53
single cell RNA-seq
13
ATAC-seq
3
snDrop-seq
2
ChIP-seq
1
pCHi-C
Assay category
545
Transcription
13
DNA accessibility
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
601
February, 2021
312
November, 2017
292
August, 2021
192
August, 2017
171
May, 2021
167
May, 2020
160
June, 2019
120
July, 2018
97
October, 2019
87
November, 2018
82
February, 2023
70
July, 2019
66
May, 2022
63
December, 2017
57
March, 2020
51
November, 2019
47
September, 2023
44
October, 2018
35
December, 2018
23
February, 2018
23
January, 2019
22
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
May, 2019
11
October, 2017
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
5
May, 2024
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
503
bam
500
tsv
493
bigWig
89
txt
10
bed narrowPeak
6
csv
4
bed bedgraph
2
tagAlign
1
bed bed3
1
bed bed3+
Organism
648
Homo sapiens
Biosample type
592
tissue
primary cell
30
cell line
26
in vitro differentiated cells
Organ
452
connective tissue
386
adipose tissue
150
bone element
66
artery
blood vessel
66
heart
66
vasculature
55
kidney
26
epithelium
26
pancreas
8
skeleton
6
limb
3
liver
Project
601
AMP
47
KPMP
Genome assembly (visualization)
507
hg19
502
GRCh38
Lab
601
AMP-T2D consortium
47
KPMP
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
biosample_type!
primary cell
organ_slims!
blood vessel
target.investigated_as!
histone
BIOSAMPLE
ASSAY
648 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
RNA microarray
single cell RNA-seq
ATAC-seq
snDrop-seq
ChIP-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
52
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
See all biosamples
Download