Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ATAC-seq
17
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
58
DNA accessibility
17
Transcription
Date released
601
February, 2021
397
November, 2017
352
August, 2017
268
October, 2019
223
August, 2021
194
May, 2020
190
May, 2021
136
June, 2019
120
July, 2018
94
December, 2017
94
May, 2019
87
November, 2018
81
February, 2023
74
October, 2018
66
May, 2022
61
November, 2019
57
July, 2019
55
March, 2020
47
September, 2023
39
February, 2018
35
December, 2018
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
30
bed narrowPeak
10
bed bed3
7
txt
4
bed bed3+
4
tsv
3
bed bedgraph
3
bigWig
Organism
80
Homo sapiens
Biosample type
primary cell
59
tissue
16
in vitro differentiated cells
6
cell line
Organ
heart
35
artery
35
blood vessel
35
vasculature
31
eye
19
pancreas
15
epithelium
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
58
AMP
23
T1D
Genome assembly (visualization)
45
hg19
Lab
55
AMP-T2D consortium
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
biosample_type!
primary cell
month_released!
January, 2019
organ_slims!
heart
ovary
BIOSAMPLE
ASSAY
81 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
ilium
1
1
+ See 4 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
See all biosamples
Download