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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ATAC-seq
17
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
58
DNA accessibility
18
Transcription
Date released
601
February, 2021
397
November, 2017
352
August, 2017
309
August, 2021
254
October, 2019
194
May, 2020
193
May, 2021
160
June, 2019
120
July, 2018
94
December, 2017
87
November, 2018
82
February, 2023
80
April, 2019
74
October, 2018
70
July, 2019
66
May, 2022
65
May, 2019
61
November, 2019
60
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
May, 2023
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
30
bed narrowPeak
10
bed bed3
7
txt
4
bed bed3+
4
tsv
3
bed bedgraph
3
bigWig
Organism
81
Homo sapiens
Biosample type
primary cell
60
tissue
16
in vitro differentiated cells
6
cell line
Organ
36
heart
35
artery
35
blood vessel
vasculature
31
eye
19
pancreas
15
epithelium
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
59
AMP
23
T1D
Genome assembly (visualization)
45
hg19
Lab
56
AMP-T2D consortium
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
biosample_type!
primary cell
month_released!
May, 2023
November, 2020
organ_slims!
vasculature
BIOSAMPLE
ASSAY
82 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
ilium
1
1
+ See 5 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
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